PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009612342.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 846aa    MW: 92791.8 Da    PI: 6.412
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009612342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-181977357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_009612342.1 19 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                    6789*****************************************************97 PP

2START170.88.9e-541673742204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W  +++   +l vi +g  g+++l+
  XP_009612342.1 167 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYSDCRCLNVLSVIPTGngGTIELI 260
                     68999*****************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     + +++a+++l++ Rdf+++Ry+ +l++g++vi+++S++  +  p+     s+vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l+
  XP_009612342.1 261 YLQTYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTTATGGPTgppATSFVRAEMLPSGYLIRPCEGGGSMIHIVDHIDLDAWSVPEVLRPLY 355
                     ****************************************999998999********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++kt+va+l++ +
  XP_009612342.1 356 ESSKILAQKTTVAALRHIR 374
                     ***************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4511478IPR001356Homeobox domain
SMARTSM003892.3E-151682IPR001356Homeobox domain
SuperFamilySSF466892.91E-161982IPR009057Homeodomain-like
PfamPF000466.2E-161977IPR001356Homeobox domain
CDDcd000861.40E-161979No hitNo description
Gene3DG3DSA:1.10.10.601.7E-182177IPR009057Homeodomain-like
CDDcd146861.24E-571110No hitNo description
PROSITE profilePS5084826.123157385IPR002913START domain
CDDcd088754.13E-70161377No hitNo description
SMARTSM002344.6E-52166376IPR002913START domain
Gene3DG3DSA:3.30.530.206.7E-23166371IPR023393START-like domain
PfamPF018521.8E-51167374IPR002913START domain
SuperFamilySSF559616.59E-38167378No hitNo description
PfamPF086701.7E-47701845IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MALCLHRESN KNQIMDNSKY VRYTPEQVEA LERVYAECPK PTSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLTTVNRK LSAMNKLLME ENDRLQKQVS QLVYENGYMK  120
QQINTVSSTT TDTSCESVVV NGQQQRKHPT PQHPERDANN PAGLLAIAEE TLAEFLGKAT  180
GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDRPSWYSDC  240
RCLNVLSVIP TGNGGTIELI YLQTYAPTTL ASARDFWTLR YTTSLEDGSL VICERSLTTA  300
TGGPTGPPAT SFVRAEMLPS GYLIRPCEGG GSMIHIVDHI DLDAWSVPEV LRPLYESSKI  360
LAQKTTVAAL RHIRQIAQET SGEIQYTGGR QPAVLRALSQ RLCRGFNDAV NGFVDDGWTV  420
MDSDGVEDVT IAINSSSTKF LGSQYNTLSI LPTFGGVLCA RASMLLQNVP PALLVRFLRE  480
HRSEWADYGV DAYSAASLKA SPYAVPCARP GGFPSSQVIL PLAQTVEHEE FLEVVRLEGP  540
AFSPEDIALS RDMYLLQLCS GVDENASGAC AQLVFAPIDE SFGDDAPLLP SGFRVIPLEP  600
KSDGPAATRT LDLASTLEAG TGGTRPAGEI EASNYNHRSV LTIAFQFTFE SHYRDNVAAM  660
ARQYVRSIVG SVQRVAMAIA PSRLSSQLTP KPFPGSPEAV TLARWISRSY RVHTGGDLLK  720
VDSHAGDAVL KQLWHHSDAI MCCSVKMNAS AVFTFANQAG LDMLETTLLA LQDIMLDKIL  780
DEAGRKVLLS EFSKIMQQGF AHLPAGICVS SMGRPVSYEQ AVAWKVLNDE DSNHCLAFMF  840
INWSFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5603200.0AY560320.1 Nicotiana sylvestris PHAVOLUTA-like HD-ZIPIII protein mRNA, complete cds.
GenBankJQ6869320.0JQ686932.1 Nicotiana tabacum cultivar SR1 PHV HD-ZIPIII (PHV) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612342.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X2
RefseqXP_016501664.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ6Q4E90.0Q6Q4E9_NICSY; PHAVOLUTA-like HD-ZIPIII protein
TrEMBLV9LXH70.0V9LXH7_TOBAC; PHV HD-ZIPIII
STRINGPGSC0003DMT4000308290.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein